Readiness
- Readiness
- Need >5GB
- Smoke
- passed
- Artifacts
- passed
- Production
- need_gt5gb_rfantibody_weights_complete_sif_benchmark_pending
- Storage
- 5-20GB
- Strategy
- Build dedicated RFantibody Apptainer/SIF from upstream rfantibody.def or reusable RFdiffusion-family SIF; cache RFantibody/RF2/ProteinMPNN weights under shared cache.
- Next
- Build /media/nik/seagate_nik/bio_server/containers/rfantibody/rfantibody.sif from upstream rfantibody.def, run minimal antibody/nanobody pipeline, then wire real adapter if Slurm/API artifacts pass.
2026-07-18T17:33:47+08:00 SOP large-tool batch: remains Need >5GB with exact install path. Official RFantibody describes a three-stage pipeline: antibody-finetuned RFdiffusion backbone design, ProteinMPNN sequence design, and RoseTTAFold2 filtering. No RFantibody source/checkpoints/SIF or real Slurm benchmark are staged under current shared root; current runner is rfantibody-smoke placeholder. 2026-07-18T18:39:16+08:00 SOP Need >5GB active batch: Read-only audit confirmed official RFantibody is MIT/public and stageable; weights are about 1.65GB before CUDA/PyTorch/DGL/RFdiffusion/RoseTTAFold2 runtime. No source/checkpoints/SIF or real Slurm benchmark are staged locally yet. 2026-07-18T19:02:14+08:00 SOP Need >5GB active install batch: No new install completed in this batch; remains stageable public MIT RFantibody/RFdiffusion/ProteinMPNN/RoseTTAFold2 pipeline with checkpoints and CUDA SIF required. 2026-07-18T20:49:48+08:00 SOP targeted make-ready/reclassify batch: Kept in active Need >5GB. It remains public/stageable, but still needs RFantibody/RFdiffusion/ProteinMPNN/RoseTTAFold2 source, checkpoints, CUDA SIF, and a real Slurm/API antibody benchmark. 2026-07-18T21:37:01+08:00 SOP Need >5GB batch source-staging: Official repo cloned to backend /media/nik/seagate_nik/bio_server/repos/rfantibody at 8fe3114 (52MB). Upstream README documents Apptainer/HPC path and rfantibody.sif about 8GB including dependencies/weights; required weights include RFdiffusion_Ab.pt, ProteinMPNN_v48_noise_0.2.pt, RF2_ab.pt, and RFab_noframework-nosidechains weights. No SIF/weights/Slurm benchmark yet. 2026-07-18T22:34:12+08:00 SOP Need >5GB continuation batch: No new runtime build completed in this continuation. Source remains staged; next production step remains RFantibody SIF/weights plus antibody/nanobody Slurm/API benchmark. 2026-07-19T22:38:00+08:00 SOP Need >5GB active install batch: Backend source still staged at /media/nik/seagate_nik/bio_server/repos/rfantibody commit 8fe3114. Resumable asset download started via /media/nik/seagate_nik/bio_server/logs/resume_rfantibody_rfdiffusion_assets_20260719.sh with log /media/nik/seagate_nik/bio_server/logs/resume_rfantibody_rfdiffusion_assets_20260719.log. RFdiffusion_Ab.pt resumed from partial 336MB toward expected 483,452,922 bytes; the script will then download ProteinMPNN, RF2_ab, RFab no-framework weights and RFdiffusion checkpoints. No SIF build or Slurm/API antibody benchmark yet, so not Production Ready. 2026-07-19T23:00:00+08:00 SOP Need >5GB active install continuation: RFantibody resumable download remains active on backend. Complete files observed: RFdiffusion_Ab.pt 483,452,922 bytes and ProteinMPNN_v48_noise_0.2.pt 6,681,301 bytes. RF2_ab.pt is actively downloading from files.ipd.uw.edu and was 35MB of expected ~294.8MB at last check; RFab no-framework weight not started yet. Log: /media/nik/seagate_nik/bio_server/logs/resume_rfantibody_rfdiffusion_assets_20260719.log. Still needs rfantibody.sif build and Slurm/API benchmark. 2026-07-20T22:45:00+08:00 SOP Need >5GB continuation: RFantibody public weight downloads completed: RFdiffusion_Ab.pt 483,452,922 bytes, ProteinMPNN_v48_noise_0.2.pt 6,681,301 bytes, RF2_ab.pt about 282MB, and RFab_noframework-nosidechains-5-10-23_trainingparamsadded.pt 843MB; weights folder 1.6GB. Classic RFdiffusion checkpoint cache also populated for shared RF family. No rfantibody.sif build or antibody benchmark yet.