IgDesign

5-30 minutesPaperCodeNeed >5GB

In vitro validated antibody design against antigens

Readiness

Readiness: Need >5GB
Smoke: passed
Artifacts: passed
Production: need_gt5gb_igdesign_checkpoint_runtime_pending
Storage: 5-20GB
Strategy: Shared PyTorch/Lightning/Hydra/ANARCI/Transformers SIF with IgDesign checkpoints cached under shared model path.
Next: Run download_ckpts.sh, build runtime, run default predict.py benchmark, verify output CSV/structures, then wire adapter.

No obvious large model/database dependency identified; validate upstream docs before install. Worker 4 evidence 2026-07-01: source https://github.com/AbSciBio/igdesign revision 70431ee staged at /media/nik/seagate_nik/bio_server/tools/igdesign/source. Source is 31MB, but public checkpoint igdesign_acvr2b_holdout.ckpt is ~11.5GB; igmpnn checkpoint is ~6.8MB. Slurm probe job 264 on GPU partition ran for 2s and blocked before benchmark due missing pandas, lightning, hydra, datasets, anarci, transformers; checkpoint download deferred to 5-20GB phase. 2026-07-17T01:18:00+08:00 SOP Need >5GB next-10 audit: remains Need >5GB. Runner audit is not_configured; current backend inventory found no igdesign source/checkpoint. Existing notes cite ~11.5GB public checkpoint and missing PyTorch/Lightning/Hydra/datasets/ANARCI/Transformers stack. 2026-07-18T21:37:01+08:00 SOP Need >5GB batch source-staging: Official repo cloned to backend /media/nik/seagate_nik/bio_server/repos/igdesign at 70431ee (5.8MB). README provides download_ckpts.sh; local evidence estimates main checkpoint about 11.5GB plus IgMPNN checkpoint. Needs PyTorch/Lightning/Hydra/ANARCI/Transformers runtime. No checkpoint/runtime/benchmark yet. 2026-07-18T22:34:12+08:00 SOP Need >5GB continuation batch: No new runtime build completed in this continuation. Source remains staged; next production step remains checkpoint download (~11.5GB) plus PyTorch/Lightning/Hydra/ANARCI runtime and predict.py benchmark.