Bio Mega Server

Dashboard Workspace Tools Jobs

GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

Back

Utilities & Conversions

PDB-SDF Converter (from NS)

secondsPaperCodeProduction Ready

Converts PDB files to SDF files and vice versa

Details Paper Code

Job Name

Log in to submit jobs to the Slurm backend.

EXAMPLES

Input File *Output FormatSettings JSON

Source: NeuroSnap.

Readiness

Readiness: Production Ready
Smoke: passed
Artifacts: passed
Production: ready
Storage: <5
Strategy: installed/configured on Ubuntu backend; Slurm CPU adapter configured
Next: Ready for user-facing frontend submission; expand benchmark set before public production release.

Installed Ubuntu Open Babel 3.1.1; Slurm smoke job 210 completed in 0.011 s and produced converted.sdf.

ClusterProt (from NS)

Cluster same length proteins using only their structures.

Utilities & Conversions

PDB Animator (from NS)

Render animated GIF and MP4 files from multi-model PDB structures.

Utilities & Conversions

PDBFixer (from NS)

Fix common issues with PDB files such as missing atoms.

Utilities & Conversions

PDB-mmCIF Converter (from NS)

Converts PDB files to CIF / mmCIF files and vice versa

Utilities & Conversions

Chain Exporter (from NS)

Split one structure into separate chain-level PDB or mmCIF files.

Utilities & Conversions