Bio Mega Server

Dashboard Workspace Tools Jobs

GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

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Utilities & Conversions

PDB Animator (from NS)

Need Code Links

Render animated GIF and MP4 files from multi-model PDB structures.

Job Name

Log in to submit jobs to the Slurm backend.

EXAMPLES

Multi-model PDB File *Output FormatFrames per SecondSettings JSON

Source: NeuroSnap.

Readiness

Readiness: Need Code Links
Smoke: not_tested
Artifacts: not_applicable
Production: not_started
Storage: not listed
Strategy: pause; identify upstream code
Next: Find/confirm exact upstream code link before install.

No code link in catalog; pause until upstream package/repo is identified.

ClusterProt (from NS)

Cluster same length proteins using only their structures.

Utilities & Conversions

PDBFixer (from NS)

Fix common issues with PDB files such as missing atoms.

Utilities & Conversions

PDB-mmCIF Converter (from NS)

Converts PDB files to CIF / mmCIF files and vice versa

Utilities & Conversions

Chain Exporter (from NS)

Split one structure into separate chain-level PDB or mmCIF files.

Utilities & Conversions

PDB-SDF Converter (from NS)

Converts PDB files to SDF files and vice versa

Utilities & Conversions