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Evolution & Phylogenetics

MUSCLE v5 MSA Generation (from NS)

secondsPaperCodeProduction Ready

Rapidly generate high-quality multiple sequence alignments for protein sequences.

Details Paper Code

Job Name

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EXAMPLES

Protein Sequences *FASTA FileMode

Source: NeuroSnap.

Readiness

Readiness: Production Ready
Smoke: passed
Artifacts: passed
Production: ready
Storage: <5
Strategy: installed on Ubuntu backend via apt/venv; Slurm CPU adapter configured
Next: Ready for user-facing frontend submission; expand benchmark set before public production release.

Installed from Ubuntu apt muscle 5.1.0-1; Slurm smoke job 202 completed in 0.003 s and produced aligned.fasta.

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Construct phylogenetic trees from protein structures using Foldseek.

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mmseqs2 MSA Generation (from NS)

Rapidly generate diverse and quality MSAs with support for various pairing modes.

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MAFFT MSA Generation (from NS)

Rapidly generate multiple sequence alignments for protein sequences.

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FastTree (from NS)

Rapidly infer maximum-likelihood phylogenetic trees for large sequence datasets.

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AlphaFind (from NS)

Fast structure similarity search across AlphaFold DB.

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