Bio Mega Server

Dashboard Workspace Tools Jobs

GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

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Evolution & Phylogenetics

Foldtree (from NS)

Need Code Links

Construct phylogenetic trees from protein structures using Foldseek.

Job Name

Log in to submit jobs to the Slurm backend.

EXAMPLES

Protein Structure Files *Alignment MethodTree Method

Source: NeuroSnap.

Readiness

Readiness: Need Code Links
Smoke: not_tested
Artifacts: not_applicable
Production: not_started
Storage: not listed
Strategy: pause; identify upstream code
Next: Find/confirm exact upstream code link before install.

No code link in catalog; pause until upstream package/repo is identified.

mmseqs2 MSA Generation (from NS)

Rapidly generate diverse and quality MSAs with support for various pairing modes.

Evolution & Phylogenetics

MUSCLE v5 MSA Generation (from NS)

Rapidly generate high-quality multiple sequence alignments for protein sequences.

Evolution & Phylogenetics

MAFFT MSA Generation (from NS)

Rapidly generate multiple sequence alignments for protein sequences.

Evolution & Phylogenetics

FastTree (from NS)

Rapidly infer maximum-likelihood phylogenetic trees for large sequence datasets.

Evolution & Phylogenetics

AlphaFind (from NS)

Fast structure similarity search across AlphaFold DB.

Evolution & Phylogenetics