Bio Mega Server

Dashboard Workspace Tools Jobs

GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

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Utilities

Multiple Sequence Alignment

5-30 minutesPaperCodeNeed >5GB

Multiple sequence alignment (MSA)

Details Paper Code

Job Name

Log in to submit jobs to the Slurm backend.

EXAMPLES

Sequence *

MSA Database Generate separate MSA for each chainTemplate Search

Tamarind API type: msa.

Readiness

Readiness: Need >5GB
Smoke: passed
Artifacts: passed
Production: not_started
Storage: >5
Strategy: large shared SIF/database/model bundle phase
Next: Defer to large-model/database phase or allow larger shared storage bundle.

production database/search index can exceed 5GB unless using tiny demo DB

BLAST Search

Search proteins against public databases

Molstar Viewer

A web macromolecule viewer embedded into Tamarind (Visualize your PDB files and more!)

AllMetal3D

Add metal ions to protein

SuperWater

Add waters to protein

PULCHRA

All-atom reconstruction and refinement of reduced protein models