Readiness
- Readiness
- Need >5GB
- Smoke
- not_tested
- Artifacts
- not_applicable
- Production
- need_gt5gb_disco_cuda_deepspeed_openfold_ligandmpnn_runtime
- Storage
- 5-20GB
- Strategy
- dedicated shared GPU/runtime SIF phase
- Next
- Build/stage the DISCO CUDA PyTorch >=2.5 + uv + DeepSpeed/OpenFold/LigandMPNN shared SIF, then run upstream runner/inference.py Slurm smoke with summary/results artifacts.
No obvious large model/database dependency identified; validate upstream docs before install. 2026-07-05 SOP batch recheck: backend inventory found no staged DISCO source/runtime/artifacts/runner. Upstream needs uv/Python 3.11+, torch>=2.5, DeepSpeed, OpenFold/LigandMPNN workspace deps, and optional GPU support. Kept Smoke Pending pending source/install validation. 2026-07-05 18:35 +08:00 backend re-audit: no DISCO staged source/runtime/artifacts/runner found; incidental discovery.py hits are unrelated Python package files. Kept Smoke Pending. 2026-07-06 21:01 +08:00 recheck: no DISCO source/runtime/artifacts/runner are staged. Upstream-style stack needs Python 3.11+, uv, torch >=2.5, DeepSpeed, and OpenFold/LigandMPNN workspace dependencies; current shared slim SIFs cannot run a valid inference smoke. 2026-07-06 21:34 +08:00 recheck: no staged source/runtime sufficient for direct smoke; CUDA/DeepSpeed/OpenFold/LigandMPNN-style stack remains pending. 2026-07-07 00:14 +08:00 continuation: included in next-10 Smoke Pending review; no SOP-valid direct Slurm smoke completed in this pass. Status unchanged pending the previously identified runtime/model/container blocker. 2026-07-07 00:58 +08:00 continuation: reviewed in the remaining Smoke Pending batch; no SOP-valid direct Slurm smoke completed and status remains unchanged pending the established runtime/model/container blocker. 2026-07-07 01:16 +08:00 continuation: reviewed in remaining Smoke Pending batch; no SOP-valid direct Slurm smoke completed and status remains unchanged pending the established runtime/model/container blocker. 2026-07-07 03:24 +08:00 continuation: sidecar/local review found no staged DISCO source, CUDA PyTorch/uv/DeepSpeed/OpenFold/LigandMPNN SIF, Slurm script, or run artifacts under the shared backend; no SOP-valid inference smoke feasible. Kept Smoke Pending. 2026-07-07 04:32 +08:00 continuation: sidecar/backend review confirmed no staged DISCO source, env, SIF, Slurm script, run directory, or artifacts; CUDA Torch >=2.5/uv/DeepSpeed/OpenFold/LigandMPNN runtime remains unstaged. Kept Smoke Pending. 2026-07-07 15:26 +08:00 implementation attempt: backend inventory still has no staged DISCO source, env, SIF, Slurm script, run directory, or artifacts. The broad find only matched unrelated discovery.py/discord.py files in other envs. No SOP-valid inference smoke was possible. Kept Smoke Pending. 2026-07-07 15:32 +08:00 final Smoke Pending triage: reclassified from Smoke Pending to Need >5GB. Source was staged at /media/nik/seagate_nik/bio_server/tools/disco/source/DISCO, rev 82b594f838eb61dd8c78ae3a403ccb8f00cf7abf, footprint ~36 MB. README/pyproject require Python >=3.11,<3.13, uv, torch>=2.5, deepspeed>=0.18.3, OpenFold and LigandMPNN workspace deps, with CUDA backend selection and DeepSpeed/CUTLASS GPU attention guidance. This belongs to a dedicated CUDA PyTorch/DeepSpeed/OpenFold/LigandMPNN shared SIF phase, not the lightweight smoke queue.