Readiness
- Readiness
- Production Ready
- Smoke
- passed
- Artifacts
- passed
- Production
- ready
- Storage
- <5
- Strategy
- staged DERNA C++ binary under shared backend source tree with host-command Slurm adapter
- Next
- Production Ready for scoped DERNA Zuker MFE-only protein-to-RNA design mode. Optional expansion: expose all DERNA model/mode/lambda controls in the GUI.
No obvious large model/database dependency identified; validate upstream docs before install. 2026-07-05 SOP batch recheck: backend inventory found no staged DERNA source/binary/artifacts/runner. Upstream is C++11/Bioconda with no obvious model/token/large database dependency, so it remains a small shared CPU SIF smoke candidate. Kept Smoke Pending. 2026-07-05 18:21 +08:00 backend re-audit: no staged DERNA source/binary/artifacts/runner found under shared backend root; only UI/form metadata exists locally. Kept Smoke Pending. 2026-07-06 01:00 +08:00 implementation pass: cloned official elkebir-group/derna source rev adecda8277add8c0b75512434bd729f30b8fd7d6 under /media/nik/seagate_nik/bio_server/tools/derna/source, built with CMake and make on the Ubuntu backend, and ran direct Slurm job 435 at /media/nik/seagate_nik/bio_server/runs/derna/smoke_20260706_010000. Documented P15421 Zuker MFE-only benchmark completed with energy -148.7, CAI 0.717966, RNA size 234, and artifacts P15421_MFE_only.txt, summary.json, results.csv, cmake.log, make.log, job.log, slurm.out, and slurm.err. 2026-07-08T00:21:35+08:00 SOP runner-adapter pass: added real backend adapter using staged DERNA C++ binary. Ubuntu runner API job 4db85cc1b832 / Slurm job 524 passed documented P15421 Zuker MFE-only benchmark with energy=-148.7, CAI=0.717966, rna_size=234, designed_rna.fasta, derna_output.txt, results.csv, job.log, slurm.out, zero-byte derna.stderr, and zero-byte slurm.err.