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GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

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Protein Design

ColabDesign Fixed Backbone

30-60 minutesPaperCodeNeed >5GB

Generate sequences given structure via reversing AlphaFold

Details Paper Code

Job Name

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EXAMPLES

PDB File *Chain *Designed Residues

Number of Designs *Number of Recycles Use DropoutRecycle Mode Use Templates Enable Template Masking

Tamarind API type: fixbb.

Readiness

Readiness: Need >5GB
Smoke: not_tested
Artifacts: not_applicable
Production: not_started
Storage: >5
Strategy: large shared SIF/database/model bundle phase
Next: Defer to large-model/database phase or allow larger shared storage bundle.

generative structure/design model weights likely >5GB

All Atom Protein Design

Design ligand-binding proteins with RFdiffusion All Atom

RFpeptides

Design macrocyclic proteins

RFdiffusion3

All atom protein design with atom-level and residue-level motif scaffolding

RFdiffusion2

Enzyme active site scaffolding with atom-level or residue-level motif specification

Germinal

De novo antibody design