Bio Mega Server

Dashboard Workspace Tools Jobs

GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

Back

Protein Design

BAGEL Protein Design (from NS)

NewNeed Code Links

User-configured BAGEL workflows for mini-enzyme, mimic-enzyme, and binder design.

Job Name

Log in to submit jobs to the Slurm backend.

EXAMPLES

Workflow *Target Protein SequenceTarget StructureDesign ConstraintsNumber of Designs

Source: NeuroSnap.

Readiness

Readiness: Need Code Links
Smoke: not_tested
Artifacts: not_applicable
Production: not_started
Storage: not listed
Strategy: pause; identify upstream code
Next: Find/confirm exact upstream code link before install.

No code link in catalog; pause until upstream package/repo is identified.

All Atom Protein Design

Design ligand-binding proteins with RFdiffusion All Atom

RFpeptides

Design macrocyclic proteins

RFdiffusion3

All atom protein design with atom-level and residue-level motif scaffolding

RFdiffusion2

Enzyme active site scaffolding with atom-level or residue-level motif specification

Germinal

De novo antibody design