Readiness
- Readiness
- Production Ready
- Smoke
- pass_real
- Artifacts
- pass
- Production
- production_ready_adp_diffab_cpu_no_cuda_slurm_api_validated
- Storage
- 5-20GB
- Strategy
- Production Ready via backend Python3.8 DiffAb micromamba env /home/nik/bio_server_venvs/antibody_diffusion_properties_py38, source/checkpoints under /media/nik/seagate_nik/bio_server/repos/antibody-diffusion-properties, CPU/no-CUDA execution because PyTorch 1.12 CUDA11.3 does not support RTX 5050 sm_120.
- Next
- Production Ready for bounded DiffAb CPU/no-CUDA one-sample CDR design. Optional hardening: expose user PDB/heavy/light/CDR/sample controls, add GPU-capable PyTorch build when RTX 5050 sm_120 support is available, and add larger antibody benchmark.
generative structure/design model weights likely >5GB 2026-07-17T01:36:00+08:00 SOP Need >5GB next-10 audit: remains Need >5GB. Runner audit is not_configured and local object-store evidence is generic-smoke only. Backend inventory under /media/nik/seagate_nik and /home/nik found no antibody-diffusion-properties source/model/SIF assets; stage upstream repo/model assets and build a real GPU SIF/cache before Slurm validation. 2026-07-19T22:38:00+08:00 SOP Need >5GB active install batch: Still no staged backend source/model/SIF was identified in current records for antibody-diffusion-properties. It remains in the large-model active queue because a real antibody diffusion/property model stack is expected to require GPU weights/assets, but exact upstream code and model bundle must be confirmed before installing. 2026-07-19T22:45:00+08:00 SOP Need >5GB active install batch: Official source staged on backend at /media/nik/seagate_nik/bio_server/repos/antibody-diffusion-properties commit 7a29262 (31MB). Public checkpoint assets downloaded: trained_models/codesign_single.pt 61,402,139 bytes and diffab/tools/ddg/data/model.pt 12,523,241 bytes. The tool may not intrinsically need >5GB for model assets, but runtime still needs Python 3.8, PyTorch 1.12.1/CUDA11.3, mmseqs2, pdbfixer, biopython, abnumber, and DiffAb/DDG import validation before runner wiring. 2026-07-19T23:00:00+08:00 SOP Need >5GB active install continuation: ADP Python3.8 DiffAb environment build started in background at /home/nik/bio_server_venvs/antibody_diffusion_properties_py38. Log: /media/nik/seagate_nik/bio_server/logs/antibody-diffusion-properties/build_adp_env_20260719.log; PID file: /media/nik/seagate_nik/bio_server/logs/antibody-diffusion-properties/build_adp_env_20260719.pid. Micromamba transaction was still active after solving 160 packages / 2GB download; no design benchmark run yet. Public source/checkpoints remain staged. 2026-07-20T22:20:00+08:00 SOP production validation: promoted from Need >5GB to Production Ready. Built Python 3.8 DiffAb runtime at /home/nik/bio_server_venvs/antibody_diffusion_properties_py38 (5.9GB), fixed Pillow/libtiff compatibility with libtiff.so.5, staged official source /media/nik/seagate_nik/bio_server/repos/antibody-diffusion-properties commit 7a29262, and public checkpoints trained_models/codesign_single.pt 61,402,139 bytes plus diffab/tools/ddg/data/model.pt 12,523,241 bytes. Direct CPU/no-CUDA benchmark on bundled 3QHF_Fv.pdb passed after setting CUDA_VISIBLE_DEVICES empty to avoid PyTorch 1.12/RTX 5050 sm_120 incompatibility. Added real cluster_runner adapter and registry route. Runner API job 4b0fa6aaa46f / Slurm 828 completed with 6 designed CDR PDB artifacts: H_CDR1 141,030 bytes, H_CDR2 140,868, H_CDR3 138,114, L_CDR1 140,544, L_CDR2 140,949, L_CDR3 138,924; plus results.csv 233 bytes, summary.json 1,041 bytes, metadata/log/reference PDB, and empty slurm.err.