Transcript Assembly (from NS)

secondsPaperCodeProduction Ready

Easily perform transcript quantification using an input fastq file.

Readiness

Readiness: Production Ready
Smoke: passed
Artifacts: passed
Production: ready
Storage: <5
Strategy: installed/configured on Ubuntu backend; Slurm CPU adapter configured
Next: Ready for user-facing frontend submission; expand benchmark set before public production release.

Installed Ubuntu StringTie 2.2.1 and Samtools 1.19.2; Slurm smoke job 215 completed in 0.053 s and produced transcripts.gtf. This is a StringTie reference-guided adapter; exact NeuroSnap no-reference pipeline remains opaque.