Readiness
- Readiness
- Production Ready
- Smoke
- passed
- Artifacts
- passed
- Production
- ready
- Storage
- <5
- Strategy
- shared python312_slim.sif + proteusai_py312_site + upstream ProteusAI VHSE encoder with NumPy scoped MLDE adapter
- Next
- Production Ready for scoped ProteusAI VHSE/NumPy MLDE mode. Optional expansion: full ESM/structure/design modes with heavier dependencies and weights.
No obvious large model/database dependency identified; validate upstream docs before install. 2026-07-05 triage: upstream ProteusAI requires Python 3.8/PyTorch/scikit-learn/torch-geometric family dependencies; use a minimal VHSE/random-forest demo smoke before any ESM-weighted run. 2026-07-05 SOP recheck: backend inventory has no staged ProteusAI source/Py38 runtime and runner audit is not_configured. Kept Smoke Pending. 2026-07-05 SOP batch recheck: backend inventory has no staged ProteusAI source/Python 3.8 runtime and runner audit is not_configured. Kept Smoke Pending. 2026-07-05 18:19 +08:00 backend re-audit: no staged ProteusAI source or Python 3.8/PyTorch runtime found under shared backend paths; runner remains not configured and no direct Slurm smoke exists. Agents agreed Smoke Pending remains correct. 2026-07-06 implementation pass: cloned ProteusAI source at /media/nik/seagate_nik/bio_server/tools/proteusai/source rev b4584dc9c64334ac0cf5e8f9fee54878aa1fb735 and staged a Python 3.12 overlay at /media/nik/seagate_nik/bio_server/envs/proteusai_py312_site reusing shared python312_slim.sif plus palm_py312_site CPU Torch/scikit-learn. Direct Slurm job 454 passed a scoped ProteusAI VHSE/random-forest MLDE smoke at /media/nik/seagate_nik/bio_server/runs/proteusai/smoke_20260706_153000, using upstream proteusAI/ml_tools/torch_tools/vhse_encoder to produce finite 8x208 VHSE features, RandomForest predictions, summary.json, results.csv, input_sequences.csv, predictions.csv, vhse_features.npy, vhse_features.csv, job.log, slurm.out, and empty slurm.err. Scope caveat: this validates the lightweight VHSE/RF path only; full ESM/structure/design modes remain unwired. 2026-07-07T21:40:53+08:00 SOP runner-adapter pass: added real backend adapter using shared python312_slim.sif, ProteusAI source at /media/nik/seagate_nik/bio_server/tools/proteusai/source, and proteusai_py312_site overlay. Ubuntu runner API job 7a210d96e117 / Slurm job 520 passed cleanly for scoped VHSE + NumPy regression MLDE mode; artifacts included summary.json, results.csv, input_sequences.csv, predictions.csv, proteusai_runtime.json, vhse_features.csv, vhse_features.npy, job.log, slurm.out, and zero-byte slurm.err.