PALM

secondsPaperCodeNeed >5GB

Protein aggregation propensity prediction

Readiness

Readiness: Need >5GB
Smoke: passed
Artifacts: passed
Production: deferred_python310_esm_container
Storage: 5-20
Strategy: shared python312_slim.sif + tool ext3 overlay
Next: Build proper Python 3.10 shared SIF or Linux-filesystem env and validate ESM-backed PALM model before production promotion.

SOP probe used upstream PALM revision 8cf063e614c920baf0398fbafdc4b5b19c9c0a87 at /media/nik/seagate_nik/bio_server/repos/palm. Site env /media/nik/seagate_nik/bio_server/envs/palm_py312_site is ~17G via pip --target on Python 3.12, while PALM declares Python >=3.10,<3.11. Slurm job 362 completed CPU PALM_NNK_OH tiny inference on KLVFFAE and AAAAAAKLVFFAAAAAA with sequence scores in [0,1] and residue lengths matching sequences. Full ESM-backed PALM/PALM_NNK models were not benchmarked.