Bio Mega Server

Dashboard Workspace Tools Jobs

GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

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Ligand/Drug Design & Screening

DynamicBind (from NS)

Need Code Links

Predict protein-ligand complexes using protein structure files and ligands in SMILES format.

Job Name

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EXAMPLES

Protein Sequence *Protein Structure

Ligand Input TypeLigand SMILES *Ligand File

Number of Poses Model Protein Flexibility

Source: NeuroSnap.

Readiness

Readiness: Need Code Links
Smoke: not_tested
Artifacts: not_applicable
Production: not_started
Storage: not listed
Strategy: pause; identify upstream code
Next: Find/confirm exact upstream code link before install.

No code link in catalog; pause until upstream package/repo is identified.

DiffDock-L (from NS)

Dock a ligand onto any protein receptor with high accuracy.

Ligand/Drug Design & Screening

GenMol (from NS)

Generative AI for small molecule design and optimization.

Ligand/Drug Design & Screening

PocketFlow (from NS)

PocketFlow is a Deep Generative Model that generates ligands for target protein binding pockets.

Ligand/Drug Design & Screening

PocketXMol | Dock (from NS)

Pocket-conditioned docking for small molecules or peptides.

Ligand/Drug Design & Screening

PocketXMol | Small Molecule Design (from NS)

Pocket-conditioned small-molecule generation and fragment expansion.

Ligand/Drug Design & Screening