Bio Mega Server

GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

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Protein Protein Docking

DockQ

secondsPaperCodeProduction Ready

Evaluate your docking interface

Details Paper Code

Job Name

Log in to submit jobs to the Slurm backend.

EXAMPLES

Model PDB *Native PDB *Allowed Mismatches

Readiness

Readiness: Production Ready
Smoke: passed
Artifacts: passed
Production: production_pass
Storage: <5
Strategy: validated; shared DockQ 2.1.3 venv with real runner adapter
Next: Expose model/native PDB upload and allowed mismatches option in the frontend.

DockQ 2.1.3 installed in shared /home/nik/bio_server_venvs/dockq venv. Upstream 1A2K benchmark passed through Slurm job 250 in 0.398s with 3 interfaces and expected DockQ values 0.994, 0.511, 0.453.

ColabDock

Protein-protein docking using inverted AlphaFold

Protein Protein Docking

EquiDock

Rigid body protein-protein docking

Protein Protein Docking

GeoDock

Deep learning protein-protein docking with SE(3) equivariance

Protein Protein Docking

AF2Dock

AlphaFold2-derived diffusion model for protein-protein docking. Upload receptor and ligand structures; outputs docked PDBs and ipTM scores per sample.

Protein Protein Docking

Binding ddG

Binding ddG prediction of protein complexes

Protein Protein Docking