Bio Mega Server

Dashboard Workspace Tools Jobs

GPU backend: Boltz-2 submits through the Slurm/Singularity runner adapter. Other tools stay visible until their adapters are configured.

Back

Sequence Analysis & Annotation

CodonTransformer (from NS)

Need Code Links

A deep learning-based tool for multispecies codon optimization.

Job Name

Log in to submit jobs to the Slurm backend.

EXAMPLES

Input File *Target SpeciesSettings JSON

Source: NeuroSnap.

Readiness

Readiness: Need Code Links
Smoke: not_tested
Artifacts: not_applicable
Production: not_started
Storage: not listed
Strategy: pause; identify upstream code
Next: Find/confirm exact upstream code link before install.

No code link in catalog; pause until upstream package/repo is identified.

DNA Chisel Sequence Optimizer (from NS)

DnaChisel edits DNA sequences to satisfy biological constraints and optimize properties like codon usage, motif distribution, and GC content.

Sequence Analysis & Annotation

TIsigner Expression Optimization (from NS)

A nucleotide sequence based method for optimizing protein expression.

Sequence Analysis & Annotation

Razor Signal Peptide Detection (from NS)

A sequence based method for detecting signal peptides.

Sequence Analysis & Annotation

WoLF PSORT Protein Localization (from NS)

Predicts subcellular localization sites from protein sequence.

Sequence Analysis & Annotation

ProtNLM (from NS)

Predict protein annotations from sequence using ProtNLM.

Sequence Analysis & Annotation