AntiDIF

1-5 minutesPaperCodeNeed >5GB

Antibody inverse folding

Readiness

Readiness: Need >5GB
Smoke: passed
Artifacts: passed
Production: need_gt5gb_pytorch_pyg_esm_runtime_pending
Storage: 5-20GB
Strategy: large shared SIF/database/model bundle phase
Next: Build shared Python 3.11 + PyTorch 2.0 + PyG/ESM/Transformers SIF or overlay, then run upstream python -m run.run on bundled 7yxu.pdb.

No obvious large model/database dependency identified; validate upstream docs before install. Worker 3 evidence 2026-07-01: source https://github.com/oxpig/AntiDIF revision 4ab06b0 staged at /media/nik/seagate_nik/bio_server/tools/antidif/source/AntiDIF. Source/checkpoint storage 113MB including AntiDIF_model.ckpt and example 7yxu.pdb. No Slurm benchmark submitted because current host Python is 3.12.3 and no AntiDIF-compatible shared environment exists. Import probe missing torch, torch_geometric, torch_scatter, torch_cluster, omegaconf, pandas, esm, transformers, pytorch_lightning. README requires Python 3.11, torch==2.0.0, PyG stack, ESM/transformers. Evidence saved under /media/nik/seagate_nik/bio_server/tools/antidif/reports/worker3/. 2026-07-07 SOP reclassification: agent audit confirmed AntiDIF needs a large shared PyTorch/PyG/ESM runtime rather than an adapter-only fix. Required Python 3.11, PyTorch 2.0, PyG/torch-scatter/torch-cluster, ESM, transformers, and pytorch_lightning are not yet staged; moved to Need >5GB. 2026-07-17T01:36:00+08:00 SOP Need >5GB next-10 audit: remains Need >5GB. Runner audit is not_configured and object-store evidence is generic-smoke only. Backend inventory did not find AntiDIF source/runtime under current shared root; needs Python 3.11 + PyTorch 2.0 + PyG/torch-scatter/torch-cluster + ESM/Transformers SIF or overlay.